##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index7_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	21921007	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.146612653332944	33.0	31.0	34.0	31.0	34.0
2	32.41780845195661	34.0	31.0	34.0	31.0	34.0
3	32.45016358053259	34.0	31.0	34.0	31.0	34.0
4	36.08574542218795	37.0	35.0	37.0	35.0	37.0
5	35.974300496323	37.0	35.0	37.0	35.0	37.0
6	35.96395708463576	37.0	35.0	37.0	35.0	37.0
7	35.939396990293375	37.0	35.0	37.0	35.0	37.0
8	35.890132966975465	37.0	35.0	37.0	35.0	37.0
9	37.626901401016845	39.0	37.0	39.0	35.0	39.0
10-14	37.865278086905406	39.2	37.2	39.4	35.0	39.4
15-19	38.828352173784715	40.0	38.0	41.0	35.0	41.0
20-24	38.6673998233749	40.0	38.0	41.0	34.0	41.0
25-29	38.339678090518376	40.0	38.0	41.0	34.0	41.0
30-34	38.29113877843294	40.0	38.0	41.0	33.6	41.0
35-39	38.000041877638196	40.0	37.2	41.0	33.0	41.0
40-44	37.922592196608484	40.0	37.0	41.0	33.0	41.0
45-49	37.60150810590043	39.6	36.2	41.0	32.4	41.0
50-54	37.04901881560459	39.0	35.2	40.8	31.2	41.0
55-59	36.37055626139803	38.2	35.0	40.0	30.4	41.0
60-64	35.610010507272776	36.8	34.0	40.0	29.4	41.0
65-69	34.69438445961903	35.6	33.6	39.0	28.4	40.6
70-74	33.697604932109186	35.0	33.0	37.4	26.8	39.6
75-79	32.692391677079435	34.8	31.8	36.2	26.0	38.8
80-84	32.0696993892662	34.8	32.0	35.2	25.6	37.0
85-89	30.99050622081367	34.0	31.2	35.0	22.8	36.0
90	30.056404890523506	34.0	31.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
11	7.0
12	118.0
13	908.0
14	4247.0
15	10880.0
16	19643.0
17	27633.0
18	34838.0
19	43060.0
20	52157.0
21	61612.0
22	71744.0
23	85000.0
24	104111.0
25	130192.0
26	167459.0
27	216061.0
28	279629.0
29	357307.0
30	453275.0
31	567614.0
32	716593.0
33	925138.0
34	1255664.0
35	1817080.0
36	2844257.0
37	4254861.0
38	4835497.0
39	2542160.0
40	42262.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.016988590991676	12.593425910582551	10.218605290891485	53.17098020753428
2	21.41809452458092	19.12435409559424	36.380614266488756	23.07693711333608
3	25.612819703036454	21.679054251476675	22.695485659030172	30.012640386456702
4	27.79868187624775	27.55375699665622	19.436201083280526	25.211360043815507
5	29.376931027158644	29.78906596129661	21.59578569859298	19.238217312951758
6	24.32866336843011	32.72026691109583	21.96571079056724	20.985358929906823
7	21.60175397051787	18.768271001418867	37.54048342760896	22.089491600454302
8	21.54989503903721	22.107369428785823	29.39174281546464	26.950992716712328
9	21.51430360840631	20.99653998559464	31.88878594856523	25.60037045743382
10-14	24.65863726059665	26.1959653587082	24.61957153701926	24.525825843675886
15-19	25.051416661652446	25.1423312806752	25.014913776543203	24.791338281129146
20-24	24.81914334006125	25.380727045451707	25.384505156661056	24.415624457825988
25-29	24.694417080513556	25.392524249908867	25.34237505408971	24.57068361548787
30-34	24.771701443133242	25.301456154851614	25.248814982858548	24.6780274191566
35-39	24.801583385817576	25.461482890712517	25.1968486335352	24.540085089934706
40-44	24.731506473767855	25.27302147248374	25.3945958028525	24.600876250895904
45-49	24.663970719076016	25.34215552214932	25.304944617073154	24.688929141701514
50-54	24.705656972017824	25.422627838795396	25.32711561393964	24.544599575247137
55-59	24.739140803980288	25.357884900142082	25.277524590044127	24.62544970583351
60-64	24.637229352264697	25.36458625956282	25.405930204268373	24.592254183904107
65-69	24.66861670291812	25.489144636001342	25.369065040947113	24.473173620133426
70-74	24.720092557078154	25.416235046832824	25.29486355259758	24.568808843491446
75-79	24.724473279509898	25.378481066765836	25.351065867598038	24.545979786126228
80-84	24.63342039614606	25.528376843070934	25.375431864168323	24.46277089661468
85-89	24.72693926706251	25.50645496981268	25.274143261848742	24.492462501276066
90	24.471655330867048	25.603225040503464	25.48575302227799	24.439366606351502
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.18796879852596
2	44.495031637917
3	55.62546008949315
4	53.01004192006326
5	48.6151483401104
6	45.31402229833693
7	43.69124557097217
8	48.500887755749545
9	47.114674065840134
10-14	49.18446310427254
15-19	49.842754942781596
20-24	49.23476779788724
25-29	49.265100696001426
30-34	49.449728862289845
35-39	49.34166847575228
40-44	49.33238272466376
45-49	49.35289986077753
50-54	49.25025654726497
55-59	49.364590509813794
60-64	49.22948353616881
65-69	49.141790323051545
70-74	49.2889014005696
75-79	49.270453065636126
80-84	49.096191292760736
85-89	49.21940176833858
90	48.91102193721855
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	3.0
1	2.5
2	3.0
3	3.5
4	5.0
5	5.0
6	6.0
7	12.5
8	21.0
9	34.0
10	42.0
11	69.0
12	120.5
13	194.0
14	323.0
15	549.0
16	991.0
17	1768.5
18	3100.0
19	5522.5
20	7095.0
21	9671.0
22	16461.0
23	26752.0
24	40690.5
25	60312.0
26	86157.0
27	118719.5
28	155598.5
29	194707.0
30	215414.0
31	237129.5
32	281587.5
33	330349.5
34	383500.5
35	434663.0
36	487774.0
37	548590.0
38	600171.0
39	641582.0
40	663148.0
41	677913.5
42	708081.0
43	736004.0
44	752261.5
45	759142.0
46	759135.5
47	754544.0
48	755032.0
49	756513.5
50	756066.0
51	748290.5
52	739241.0
53	727054.0
54	721692.5
55	722700.0
56	709992.0
57	693650.5
58	671981.0
59	643565.5
60	628642.0
61	611205.0
62	574718.0
63	527823.5
64	472690.0
65	419280.0
66	363665.0
67	305709.0
68	253533.0
69	204533.5
70	179248.0
71	157287.0
72	116745.0
73	83319.5
74	55598.5
75	33760.5
76	19333.0
77	10191.0
78	4566.5
79	1818.0
80	1018.0
81	711.5
82	287.0
83	124.0
84	64.0
85	40.0
86	24.5
87	14.0
88	8.0
89	6.0
90	6.0
91	4.0
92	3.0
93	2.0
94	0.0
95	0.0
96	0.5
97	1.0
98	0.5
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.23388980259894085
2	0.0
3	0.0
4	0.0
5	1.4141686100460624E-4
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	2.7371005355730237E-6
25-29	7.937591553161769E-5
30-34	0.0023831021996389124
35-39	0.004988821909504431
40-44	0.007194924941176287
45-49	0.0025144830253464178
50-54	0.0164372010829612
55-59	0.003344736854470235
60-64	9.944798612581986E-5
65-69	2.1440620861988682E-4
70-74	0.0039605844749741655
75-79	0.0014597869523056126
80-84	2.3721537974966204E-4
85-89	5.218738354492565E-4
90	1.9159703749011166E-4
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.1921007E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	56.02978359306652
#Duplication Level	Relative count
1	100.0
2	33.08735911143179
3	17.733101570955363
4	10.779137013107693
5	7.516972221311207
6	5.665059635083576
7	4.455959682091984
8	3.502672919877997
9	2.8828178806861042
10++	33.02067276682737
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
GAAGA	4732000	2.5873263	5.1292367	2
CCAGG	4580020	2.5687783	5.4521885	1
CCTGG	4593045	2.561896	6.109668	1
CTTCT	4832940	2.5598202	5.984766	1
AAGAA	4718895	2.528214	5.1229496	2
CTGGA	4479200	2.4668057	9.229956	1
CTGCT	4359140	2.3693557	5.2361827	1
TCCAG	4334635	2.3690834	5.5329638	2
CTCCT	4276480	2.306796	7.469122	1
CTGGG	4032320	2.2663264	8.73944	1
CAGGA	4041505	2.2380817	5.605443	1
CTTCA	4176595	2.2244303	6.109033	1
CTCCA	4037465	2.1899285	7.9183965	1
CCCAG	3882970	2.1613078	7.2253213	1
CAGAA	3887395	2.109398	5.254989	1
CTCTG	3756780	2.0419505	6.759508	1
CTGGC	3377120	1.8836809	5.537548	1
CTGAA	3463055	1.8687916	5.9979434	1
TGGAA	3436395	1.8685777	5.333617	2
CTTTT	3500145	1.8203683	5.3542986	1
CTCAG	3189000	1.7429396	6.4341993	1
CTGAG	3160370	1.7404934	5.1682343	1
CTTTG	3199780	1.707752	5.4207397	1
CTGGT	3060795	1.6763716	5.309484	1
CTTGG	3000850	1.6435403	5.6722775	1
CTCCC	2812050	1.544794	5.028652	1
>>END_MODULE
